1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttaacttcatacatttctttattgcgtttctacacttctcttttgttgctgttgttgttgatttgctttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAG
species | Glycine max |
transcript | GLYMA17G01940.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAG ACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATEST: gi|209729757|gb|BW658562.1|BW658562
genomic: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGgttaacttca ... ttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCAT
EST: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAG ACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATEST: gi|213602250|gb|DB958510.1|DB958510
genomic: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGgttaacttca ... ttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCAT
EST: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAG ACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCAT
genomic: GATATGGATCGCATAGAGGTTACTAATCTCAACCGCCAATTCTTGTTCAGgttaacttca ... ttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCAT
tgcgtttctacacttctcttttgttgctgttgttgttgatttgctttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAG
tgttgat putative branch site (score: 4)
tttgcttt CT-rich tract
ttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaacttcatacatttctttattgcgtttctacacttctcttttgttgctgttgttgttgatttgctttgcttgtagACTTGAAGATGTTGGCAAACCCAAAGCCGAGGTAGCTGCCAAGCGTGTCATGGAGAGAATTACTGGTGTCGAAATTGTGCCCCACTTTTGCAGGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA