1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aatgaaattttaacttgcaactctattatacccatttctcaccgtcttttctttatttctaatgcatgagtatcctatcctaatcatgtcttgtttgtagGCGTACACGGCCACCCTTAACAAAGCACCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGGGTGAG
species | Glycine max |
transcript | GLYMA16G21200.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
cttttctttatttctaatgcatgagtatcctatcctaatcatgtcttgtttgtagGCGTACACGGCCACCCTTAACAAAGCACCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGGGTGAG
tcctaat putative branch site (score: 2)
tcttgttt putative PPT
tttatttctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgaaattttaacttgcaactctattatacccatttctcaccgtcttttctttatttctaatgcatgagtatcctatcctaatcatgtcttgtttgtagGCGTACACGGCCACCCTTAACAAAGCACCTTCTGTTGTCATTCTTCTTTCTTGGATTGACTGGGTGAG
- - - - - - -cttgcaa
- - - - - - - - - - - - - - - -ccatttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctatcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgtc