1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaactctagaacttaaataattctctcattaaaaatattgtgtttgcttcttttccatttgtgattgttgatgctgatgtaatgaattgcatcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG
species | Glycine max |
transcript | GLYMA15G40750.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATEST: gi|209700869|gb|BW683099.1|BW683099
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATEST: gi|192301270|gb|FG990190.1|FG990190
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATEST: gi|192298646|gb|FG988557.1|FG988557
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCATATGGCAAGTCGACAGTTGTGAAAGCAATATEST: gi|213612205|gb|DB956886.1|DB956886
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATEST: gi|192296353|gb|FG991591.1|FG991591
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
EST: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTG GCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
genomic: GCATCCACTTTCTCCAGAAGTCATATCTCGGCAGGCTACTATTAATATTGgtaatatttt ... atcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATAT
gcttcttttccatttgtgattgttgatgctgatgtaatgaattgcatcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG
tgctgat putative branch site (score: 3)
taatgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaactctagaacttaaataattctctcattaaaaatattgtgtttgcttcttttccatttgtgattgttgatgctgatgtaatgaattgcatcctgacagGCACTATAGGTCATGTGGCACATGGCAAGTCGACAGTTGTGAAAGCAATATCAGGAGTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - aaaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctgat