1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtagcaacacagtgcttttgcttgtgtgtgtgaagcaagataaatttatgtaggatgtacaaatatatagttgggtttaaatgttatatgttgtctattttgtttccttggtgatttacattattctttacacagttggggaattttaggccaaatgtttgctgatcaattttatgctttttgtttggtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAA
species | Glycine max |
transcript | GLYMA04G39500.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAG GGTTTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTEST: gi|14011406|gb|BG726328.1|BG726328
genomic: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacac ... gtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCT
EST: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAG GGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTEST: gi|6963924|gb|AW432617.1|AW432617
genomic: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacac ... gtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCT
EST: AACCCAACTNTGGAAAGCTGACTTCCTTGCATNTCTATGCATGGTCCAAG GGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTEST: gi|193632339|gb|FK581923.1|FK581923
genomic: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacac ... gtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCT
EST: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAG GGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTEST: gi|31475949|gb|CD417977.1|CD417977
genomic: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacac ... gtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCT
EST: AACCCTACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAG GGTCTAAAGACTGGAATGT
genomic: AACCCAACTTTGGAAAGCTGACTTCCTTGCATTTCTATGCATGGTCCAAGgtagcaacac ... gtcatgaaagGGTCTAAAGACTGGAATGT
attttaggccaaatgtttgctgatcaattttatgctttttgtttggtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAA
tgctgat putative branch site (score: 3)
aattttatgcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagcaacacagtgcttttgcttgtgtgtgtgaagcaagataaatttatgtaggatgtacaaatatatagttgggtttaaatgttatatgttgtctattttgtttccttggtgatttacattattctttacacagttggggaattttaggccaaatgtttgctgatcaattttatgctttttgtttggtcatgaaagGGTCTAAAGACTGGAATGTATTATCTTCGATCGCGAGCTGCAGCCGATGCTATTAAGTTCACCGTTGACACCTCTGCTCTCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG