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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaagatatttgcttctactggctttttcatgacactccaatttgctccatacattctaatataaagcatcttcgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAAAATCTTGTACAGACACTAGACAGAAAACTAGTGCTTTGTCTATGCGCT

Basic information

species Glycine max
transcript GLYMA08G00560.3
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193429733|gb|FK395465.1|FK395465
EST:     ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG                         GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: gi|31312544|gb|CD397747.1|CD397747
EST:     ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG                         GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: gi|207733915|gb|GD710647.1|GD710647
EST:     ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG                         GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: gi|105633874|gb|DW247237.1|DW247237
EST:     ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG                         GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
EST: gi|254333300|gb|GR850550.1|GR850550
EST:     ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAG                         GCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA
genomic: ATAGTGATCTTGTTTCTGCTGTCAGCTATGCTAGGTCTGCAGGAGTGAAGgtgaagatat ... cgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgacactccaatttgctccatacattctaatataaagcatcttcgtgtttcagGCTTTAAAGTTGCATTTGGATTTTGGCAGTTCAACCAAAGCAACAACTCCAAAATCTTGTACAGACACTAGACAGAAAACTAGTGCTTTGTCTATGCGCT
                          ttctaat  putative branch site (score: 2)
                                       catcttc  putative PPT
                     atacattctaatataa  TA-rich tract