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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtcaattttctccatttgtgtttttcttgcaaattttcttttaaatatattaaaccctcatttgttatttctctgacctggtaaattgtcttatcatgtaatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATC

Basic information

species Glycine max
transcript GLYMA20G29060.1
intron # 11
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 11
lower sequence: Vv16s0022g02110.t01 (Vitis vinifera), 3'ss of exon 11
gtgagtcaattttctccatttgtgtttttcttgcaaattttcttttaaatatattaaaccctcatttgttatttctctgacctggtaaattgtcttatcatgtaatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATC
    || | ||       || |   | ||| | |   ||| | ||| |   | | | | |||       | ||  |   |  |   |||        |    |  | ||||||||||||||||  |||||   |||||||||||  | ||| |||| ||  |||| ||  ||||||||||| |||| |||||||||||||| | |||
----gtaagttc------ttaggaatcttcatcctgttttccatttgagc-tttgatatcct-----actgttgattgaaattctgaaaacactgggttgcttcttgtgcagGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208196625|gb|GD995788.1|GD995788
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT                         GGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTAT
EST: gi|208174867|gb|GD970368.1|GD970368
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT                         GGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTAT
EST: gi|207778095|gb|GD747132.1|GD747132
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT                         GGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCAATGGAGAACTA
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCA-TGGAGAACTA
EST: gi|207816193|gb|GD786628.1|GD786628
EST:     CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTT                         GGTTATACTGAAGTAAAGCAAAGATCACTTCTA-CTTCCNTGGAGAACTAT
genomic: CTGGTTTACCAGTCATTGAATTACTGGCAAAGGCTCTTGCAAAGGCTGTTgtgagtcaat ... taatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accctcatttgttatttctctgacctggtaaattgtcttatcatgtaatatgcagGGTTATACTGAAGTAAAGCAAAGATCACTTCTAACTTCCATGGAGAACTATGTTACATTACTTCTTGAGACTGGCAAACCAATCTACACCCAATC
                 ctctgac  putative branch site (score: 3)
                                     ttatcatgtaatat  TA-rich tract