1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gataatgatgatagtgtgtgatcttgttgtgtactctatcttatctcaaacattcatctattatttattaatactatcctcatctgttgcagatcctaagGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGG
species | Glycine max |
transcript | GLYMA16G25740.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|19937594|gb|BQ081353.1|BQ081353
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: TGGCGAGAAAATATAAACAACTTTGAAGAAAATGTTTTCCAGATCCTAAG GGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGEST: gi|58021693|gb|CX708434.1|CX708434
genomic: TGGCGAGAAAATATAAACAACTTTGAAGAAAATG-ATT-----TCC--AGgtatctgtgc ... agatcctaagGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTG
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|209701013|gb|BW652151.1|BW652151
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: CTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|15814132|gb|BI786407.1|BI786407
genomic: CTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|12690118|gb|BG156454.1|BG156454
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: ATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|13180759|gb|BG352099.1|BG352099
genomic: ATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|13180759|gb|BG352099.1|BG352099
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAG AEST: gi|16346805|gb|BI972400.1|BI972400
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGgtatctgtgc ... agatcctaag-
EST: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTTCCAGATCCTAAGEST: gi|12773665|gb|BG238592.1|BG238592
genomic: CCATATTCTGGCGAGAAAATATAAACAACTTTGAAGAAAATGA-TT-----TCC--AGgtatctgtgc ... aga
EST: CTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATTCCAGATCCTAAG GGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTG
genomic: CTGGCGAGAAAATATAAACAACTTTGAAGAAAATGATT-----TCC-A-Ggtatctgtgc ... agatcctaagGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTG
tcaaacattcatctattatttattaatactatcctcatctgttgcagatcctaagGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGG
tattaat putative branch site (score: 2)
attcatctattattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gataatgatgatagtgtgtgatcttgttgtgtactctatcttatctcaaacattcatctattatttattaatactatcctcatctgttgcagatcctaagGGTCCTAATAACAATTTTGGACACGTCCAATGATCCAAGGACTCTGGCTGTTGCTTGCTATGACCTTTCACAGTTTATCCAGTGCCATTCTGCTGGACGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -tgatgat
- - - - - - -gtgtgtg
- - - - - - - - - - - - - -tgtgtac
- - - - - - - - - - - - - - - - - - - - - - - caaacat