Sequence
atgc intronic sequence ATGC exonic sequence...tctcttctttttactgacaaaatgtagagcatcttttgctgttgataagataccaaataaaacgtgtcttttacgcttattttcctctacaacattgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
Basic information
species | Glycine max |
transcript | GLYMA20G31400.1 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 10
lower sequence: AT1G34320.1 (Arabidopsis thaliana), 3'ss of exon 8
------------------------------tctcttctttttactgacaaaatg-tagagcatcttttgctgttgataagataccaaataaaacgtgtcttttacgcttattttcctct-acaacat-tgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
|||| |||| | || | | ||||| || | | | || | | |||| ||| ||| || | || | | | || || ||||||| |||||||||| || || || | | | ||| ||||| || |||| |||||||||||||| |||||||| || ||||| || ||||||||||||||
gtgagactcgattattggataaagcgttttcgtcttattttagcgttcaggaagatagaggatttagttattttcttgt-acctaaaatgaaagatgtacttacaaatcatggccatttcacctgatatgcagATCCTGATAAGCCTGCAAATGACCCGCCAATCAATCATAAAAAACTGGGCTCTGCTGGTCTTGCCTTGCATTACGCAAACATCATTACTCAAATTGATAC
upper sequence: GLYMA20G31400.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv18s0076g00260.t01 (Vitis vinifera), 3'ss of exon 7
tctcttctttttactgacaaaatgtagagcatcttttgctgttgataagataccaaataaaacgtgtcttttacgcttattttcctctacaacattgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
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tgttaatgtctttctatttgttcttttcttgtgtgttgtcctggtttgaacgccactagttgggagtttcttgtgatggttttccttggtgaccttgcagATGGTGATAAACCAATCAAAGGTTCTACAAACAACCATAAAAAGTTGGGCAATGCTGGTCTTGCATTACATTATGCGAATATTATCACTCAAATTGATACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193714147|gb|FK650625.1|FK650625EST: TATAATCCATTTTCTATACTTGGAGATACATCAAGCATTTGGTAGTTCTG ATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGT
genomic: TATAATCCATTTTCTATACTTGGAGATACATCAAGCATTTGGTAGTTCTGgtatgctttc ... aacattgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taagataccaaataaaacgtgtcttttacgcttattttcctctacaacattgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
aaataaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tctcttctttttactgacaaaatgtagagcatcttttgctgttgataagataccaaataaaacgtgtcttttacgcttattttcctctacaacattgcagATACTGATAAGCCAGCGAAAGATTCTCAAGGCAACCATAAGAAGTTGGGGTCTGCTGGTCTTGCTTTGCATTATGCGAACATTATCACTCAAATTGATAC
- - - - - -tactgac
- - - - - - - - - - aatgtag
- - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa