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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttctagttaacaagcagatattctgtgtttaaacgtatgtcctttatctaattgacattattgtatatagccagacttgtgatggttttatgcttgtttttctttattattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTG

Basic information

species Glycine max
transcript GLYMA04G39500.1
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G39500.1 (Glycine max), 3'ss of exon 10
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 3'ss of exon 10
gtatggttctagttaaca-agcagatat-tctgtgtttaaacgtatgtcctttatctaattgacattattgtatatagccagacttgtgatggttttatgcttgtttttctttattattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTG
|| || |  |  ||| |  |||| |||| | | || ||     | | || ||| | | |||  |||     || | |      | ||| |          ||  ||||| ||| |  ||  | |||| |||||||| | || ||| |||| ||||||||| ||||||||||||| |||||||| || || | ||||||| |||||||||| || || ||||| ||||
gtctgatattttttaccttagcacatatgtttctgcttttgtttgt-tcatttgtgttattagcat----ataaaaaaatcagcatgtaa----------ctcttttttttttttcttttgttacagGTTACTGCAATAGTTACATCAAATCTGAACAAAATAATTGATGTTAACTACTACCCGGTAGAGACTGCAAAAAGGTCAAACTTGCGTCATAGACCCATTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208317270|gb|GE113251.1|GE113251
EST:     ACTTTGATAAACTAGCAGAG                         ATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTAC
genomic: ACTTTGATAAACTAGCAGAGgtatggttct ... ttaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatagccagacttgtgatggttttatgcttgtttttctttattattaatgacagATTACTGCACTGGTCACAACAAACCTGAACAAAGTAATTGATGTTAATTACTACCCAGTTGAAAATGCAAAACGGTCAAACTTACGGCACAGACCAATTG
                                           tattaat  putative branch site (score: 2)
                                tttttctttattatt  CT-rich tract
                     ttttatgcttgttttt  TA-rich tract