Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtaacccttctttctcttctccttcccaatttttcattttctcaaatgcgattttatgtttaattatcagtgcattttcaaatcgaatctcatgaaagaaataaacaaagttatttatcagtgcataagtaaatttcattattcaaaagtccataatctgctgttgtttgcagAATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCCTCTTGCGGAAGTGCCGCTGAATAGGCTCAATGCAATTGGGAGTGTTCAT

Basic information

species Glycine max
transcript GLYMA20G34060.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213590334|gb|DB970132.1|DB970132
EST:     CTTCTTCCTAGAAAAAGGCCTTCTGATTCCTCTCCCCTTCACCCTCACCG                         AATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCC
genomic: CTTCTTCCTAGAAAAAGGCCTTCTGATTCCTCTCCCCTTCACCCTCACCGgtaagtgtaa ... ttgtttgcagAATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCC
EST: gi|298174125|gb|HO017461.1|HO017461
EST:     CTTCATCCTAGAAAAAGGCCTTCTGATTCCTCTCCCCTTCACCCTCACCG                         AATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCC
genomic: CTTCTTCCTAGAAAAAGGCCTTCTGATTCCTCTCCCCTTCACCCTCACCGgtaagtgtaa ... ttgtttgcagAATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtgcataagtaaatttcattattcaaaagtccataatctgctgttgtttgcagAATCAAGAGTGCCGGTGATGTTGCTTCGGTTTCTGTTGCGAAGAGAGTTCCTCTTGCGGAAGTGCCGCTGAATAGGCTCAATGCAATTGGGAGTGTTCAT
      ataagtaaatttcatt  TA-rich tract