Sequence
atgc intronic sequence ATGC exonic sequence...ggattgaagataaacacttaagatactgcatgtaagttttgttttgttccatttggataactacaatagcttattctaaaattgggttttaattttgtagGTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTGCGAAGAAAGGTACACGCGAGCTCATATTACAGAACAAGTTGATGGACCA
Basic information
species | Glycine max |
transcript | GLYMA16G21580.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G21580.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0031g02310.t01 (Vitis vinifera), 3'ss of exon 1
------ggattgaagataaacacttaagatactgcatgtaagttttgttttgttccatttggataactacaatagcttattctaaaattgggttttaattttgtagGTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTGCGAAGAAAGGTACACGCGAGCTCATATTACAGAACAAGTTGATGGACCA
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aacaattggttttttcttttcccttttttttttttttttttttcttaccttatcatgcttgtctattgaaatcttgttttccatacaatgggctgtgtagGTCAAGATAGTGAGAAGTTGAGTCTGATAAAGCTTGCTAGCTTGATTGAAGTATCTTCAAAGAAAGGAACTCGAGATCTCAATCTCCAGAACAAGTTGAT------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15337077|gb|BI497733.1|BI497733EST: ATCCAAACCGCTGATACTTGACTCCTCGATAATACCCGCGTCCACTTCAG GTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTG
genomic: ATCCAAACCGCTGATACTTGACTCCTCGATAATACCCGCGTCCACTTCAGgtatctgatt ... aattttgtagGTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gttccatttggataactacaatagcttattctaaaattgggttttaattttgtagGTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTGCGAAGAAAGGTACACGCGAGCTCATATTACAGAACAAGTTGATGGACCA
ttattctaaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggattgaagataaacacttaagatactgcatgtaagttttgttttgttccatttggataactacaatagcttattctaaaattgggttttaattttgtagGTGAAGATAAGTTGAGTTTGATAAAACTGGCTAGCTTGATGGAAGTTTCTGCGAAGAAAGGTACACGCGAGCTCATATTACAGAACAAGTTGATGGACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - gataaac
- - - - - - - - - - - - - -gcatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggtttt