1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...agagaattatattctgtctaatatgtttatatacataataaagaaaagaaattgtagattctgatgcaagtttttcttgtcctgtgatatgtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGGAAGCAGTCAAAATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTA
species | Glycine max |
transcript | GLYMA15G40750.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGEST: gi|209700869|gb|BW683099.1|BW683099
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGEST: gi|192301270|gb|FG990190.1|FG990190
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGEST: gi|192298646|gb|FG988557.1|FG988557
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGEST: gi|213612205|gb|DB956886.1|DB956886
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGEST: gi|192296353|gb|FG991591.1|FG991591
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
EST: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCG ATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
genomic: ATTCTTCACCGTTGTAGTTGTACTCAGCCACTCGGAGACACCGCTAATCGgtaataatcc ... gtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTG
aagaaattgtagattctgatgcaagtttttcttgtcctgtgatatgtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGGAAGCAGTCAAAATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTA
ttctgat putative branch site (score: 3)
aagttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agagaattatattctgtctaatatgtttatatacataataaagaaaagaaattgtagattctgatgcaagtttttcttgtcctgtgatatgtacatgcagATAGTTTAGTTGGCAAGTCATAAATTAGTTTCATCTCTTAAGATTTCATTGGAAGCAGTCAAAATGTCACGGAAGGGTTTGATGGAACAAGACCTGAGTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - -ttctgtc
- - - - - - - - - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgatgc