1 5' 3' | 2 5' 3' | 3 5' 3' |
...atgggagatgataatgaaaacttatggctacctgactgttgatgatgtaaagttcaaagggaaagctatatttgctagtctcattttattccttgaatagATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCACTGGCTGAGACTGCAGCTTCAATGGCAGTAGCTGTAACTGTTGTTGGTGC
species | Glycine max |
transcript | GLYMA12G08390.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCACCCTGTTGATGTTTCCCTTCCCTGCTTCTCTTATTCTCAGA ATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCACEST: gi|213589752|gb|DB957601.1|DB957601
genomic: TGCAGCACCCTGTTGATGTTTCCCTTCCCTGCTTCTCTCATTCTCAGAgtaagatatt ... ccttgaatagATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCAC
EST: TGTGCAGCACCCTGTTGATGTTTCCCTTCCCTGCTTCTCTTATTCTCAGA ATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCAC
genomic: TGTGCAGCACCCTGTTGATGTTTCCCTTCCCTGCTTCTCTCATTCTCAGAgtaagatatt ... ccttgaatagATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCAC
tgtaaagttcaaagggaaagctatatttgctagtctcattttattccttgaatagATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCACTGGCTGAGACTGCAGCTTCAATGGCAGTAGCTGTAACTGTTGTTGGTGC
tctcattttattcctt CT-rich tract
tcattttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgggagatgataatgaaaacttatggctacctgactgttgatgatgtaaagttcaaagggaaagctatatttgctagtctcattttattccttgaatagATGTGAAGTTGCAATTGCAAAGAAGGAGATTATCCACCGTTTCTTTTGCACTGGCTGAGACTGCAGCTTCAATGGCAGTAGCTGTAACTGTTGTTGGTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - tggctac
- - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgctag