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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaagggttgtttgtattcattacctattattaaatgtagaatttgcttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGGTATGATCAAGATCTGAGTATGCCTTTAC

Basic information

species Glycine max
transcript GLYMA12G00830.5
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G00830.5 (Glycine max), 3'ss of exon 1
lower sequence: AT5G61500.1 (Arabidopsis thaliana), 3'ss of exon 1
--aaagggttgtttgtattcattacctattattaaatgtagaatttgcttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGGTATGATCAAGATCTGAGTATGCCTTTAC
  |     | || | |      ||  |     ||| ||    || |   |     ||   |        |||| |       ||  || |  |||  | ||||||||| |||||  || |||| |||||||||||||||||  | || |||||||| ||||||||||||||||                             
tcacgctttagtatatgactgctagttcaagctaattg-gcgatatctatatctttgcttgaatgggtaagct-tgacacaatggcttttacttttgattagGGAATCTGGTGACGCAAGCAAAAGGAAGCCATACTTGCCCTCGGACAAACAGTTTTTGATTACTAGAAATG-----------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209718977|gb|BW674817.1|BW674817
EST:     TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTG                         GGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCGCCTGAGAAACA
genomic: TTCGTCACCGCTGGCGATAATCTCGTTGCCAAATGCCCCACCTGGTCCTGgtaattccaa ... tttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgagcatgaaggctctcactagctgttgatttgtgtgttctgttttccaatagGGAATCGGGTGATCCAGGCAAGAGGAAGCCATACTTGCCACCTGAGAAACAGTTCTTGATTACTAGAAATGGTATGATCAAGATCTGAGTATGCCTTTAC
                                       ttctgttttcc  CT-rich tract
                           ttgattt  TA-rich tract