1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...ctgtgccgcgcagcagccgtggccccaatgaccgtttgcctctgcatgcatgcgatgggggttgcctaagcgcgtgactgactgatgctgtcacccgcagGTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATCGAGTACGGCATGATCGACAAGGTGCTGACCACCCCCATGCCCAAGATGC
species | Chlamydomonas reinhardtii |
transcript | EDP04400 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ACTACCTTTCGCTGCTCACCTCCAACGCCACCGGGCAACCGTACGACCGG GTGATTCGCGAGCTGTEST: gi|15698648|gb|BI722953.1|BI722953
genomic: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGGgtgagcggca ... tcacccgcagGTGATTCGCGAGCTGT
EST: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGG GTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATCEST: gi|15693934|gb|BI718239.1|BI718239
genomic: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGGgtgagcggca ... tcacccgcagGTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATC
EST: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGG GTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATCEST: gi|9461085|gb|BE453557.1|BE453557
genomic: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGGgtgagcggca ... tcacccgcagGTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATC
EST: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGAACGG GTGATTCGCGAGCTGTCACGCA
genomic: ACTACCTGTCGCTGCTCACCTCCAACGCCACCGGGCAACCCTACGACCGGgtgagcggca ... tcacccgcagGTGATTCGCGAGCTGTCACGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtgccgcgcagcagccgtggccccaatgaccgtttgcctctgcatgcatgcgatgggggttgcctaagcgcgtgactgactgatgctgtcacccgcagGTGATTCGCGAGCTGTCACGCAACAAGTGGATGGACCCCAAGCAGGCCATCGAGTACGGCATGATCGACAAGGTGCTGACCACCCCCATGCCCAAGATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - -caatgac
- - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - actgact