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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA

Basic information

species Chlamydomonas reinhardtii
transcript EDP09235
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 3'ss of exon 3
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcc-cgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
              || | | | |         |    |||  |  |  | |     || |   | ||   | |   |   |     |     |    ||||| |||||||| || ||  |||||||||| || || |||||||| ||||||||||||| ||||||||| ||||||||||||||  | |  ||||||||||
--------------gtttgtccatcaaaataattttaggctttagtgttatgttttagtaaaaccagaagttgatttcctactgttttaactactgtccagCCTCAAGATGCCTATGGTTTGGAGAAGCTTGCAACTGAGGAGCTCTGCAAGCACTACACCAAGGACTTTGGCATTGAGTGCCGTGTTGGCCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G124434_T01 (Zea mays), 3'ss of exon 3
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
            ||||||           |     | | |      |  |  |   | | || |   | ||| |  || | |    || ||      ||||| |||||||| || ||| |||||||||| || ||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||  ||||||||||
------------gtgtgttcatcgaaatacaatgacgttcctgtttgttagacatatat-acagtcaaatctaaatcccctcg---gtgttacgtttcagCCTCAAGATGCCTATGGCTTGGAGAAGCTTGCAACCGAGGAGCTGTGCAAGCACTACACCAAGGACTTTGGCATCGAGTGCCGCGTCGGCCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GRMZM2G138907_T01 (Zea mays), 3'ss of exon 3
----------gtcctct-cggccgtgtgtctgcgtgtcgccggctgcttgct-gcaccgcgacgc-cgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
            | ||| |     | |     |||||   | |   | | || |  | | |||   || || ||    || || ||||    |  |  |    |       |||| |||||||| || |||||||| || || || || |||||||||||||||||||| |  ||||| || ||||| |||||||| || |  ||||| ||||
gtttctaataaacttctgcatttctttacgctcgtgttagctgtcacctacttgagctgtgacttgcgatggcaaaa-tggtttttactgaactgatgc---ctaatttttagCCTCAAGATGCCTATGGCCTGGAAAAACTCGCGACTGAGGAGCTGTGCAAGCACTATACAAAGGATTTTGGCATCGAGTGCCGGATTGGTCGCTTTCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GLYMA20G36740.2 (Glycine max), 3'ss of exon 3
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaac-gtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
      | |   |||    |     | |     |   || ||   |  ||        |      ||    | |    |   |    ||    |     |||| |||||||| || || || |||||||| || || |||||  | ||||||||||| |||||||| || || |||||||||||||| | | | |||||||
----gtttgttggtgatcttttcaattgttcaatttatgttggttcttgattttcacattgggattgggattaatgtgtttaattttgtgactgtttttagCCACAAGATGCATATGGGCTAGAGAAGCTTGCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GLYMA03G40720.1 (Glycine max), 3'ss of exon 3
-----------gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
            | || |        |||    ||    | || |  |  ||  |          |||  ||  | |   | | |    |     || | |        |||| |||||||| || || ||||||||||| || || || ||| | |||||||| || |||||||| || || |||||||||||||| | | | ||||| |
gtatgttgctgattctttgaattacttgttcaagttattctggttattcacttaaaaatacttaggctagcagggatatatttaattttt----gactttt------atagCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGATTCCATA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GLYMA19G43400.1 (Glycine max), 3'ss of exon 3
-----------gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
            | || |        |||     |    | || |  |  ||  |          | |  ||  | |   | | | |  |     || | ||       |||| |||||||| || || ||||||||||| || || || ||| | |||||||| || |||||||| || || ||||||||||| || | | | ||||| |
gtttgttgctgattcttttaattagttgttcaacttattctggttattcacttgaaaatacttaggttagcagggatatatttaatattt----gacttttt-----atagCCACAAGATGCATATGGGCTGGAGAAGCTTGCAACAGAAGAGTTATGCAAGCATTATAACAAGGATTTTGGAATTGAGTGCCGGATTGGGAGATTCCATA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: GLYMA10G30400.1 (Glycine max), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaac-gtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
      | |   |||    |  |  | |     |   || ||   |  ||        |      ||    | |    |   |    ||          |||| |||||||| || || || ||||| || || || |||||  | ||||||||||| |||||||| || || |||||||||||||| | | | |||||||
----gttagttggtgatcttttgaattgttcaatttatgttggttcttgattttcacattgggattgggattaatttgtttaattttgtgactttttttagCCTCAAGATGCATATGGGCTAGAGAAACTTGCAACAGAGGAATTATGCAAGCACTATAACAAGGATTTTGGAATTGAGTGCCGCATTGGGAGGTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 3'ss of exon 3
---gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
    | |       | | |       | ||         |   | ||            || ||   |||||      | ||       |  || |     |||| |||||||| || ||| | |||||||| || || |||||| | |||||||||||||  |||||||| || |||||||| ||||| |  || ||||| |
gtttttcctctaatcttataaaaa-atatcagttctaaatatattcatttgaggattattggcataactgatg-----agctttt---tgcttttgttt--agCCTCAAGATGCCTATGGCTTAGAGAAGCTCGCAACTGAGGAGTTATGCAAGCACTACACTAAGGACTTTGGAATTGAGTGTCGCATTGGACGGTTCCATA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattctt----acacc-------tcccaaac--gtcttcgcccg-cagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                 | || ||   |  ||  |   ||  || | ||  |||  |||       | | |||    ||| |       |  |||||  || |||    | |||||||| ||||| ||||| || ||||| |||||||| |||||| |||||||||| ||||  |||||||||||||| |||||||| || | ||| |||||||
--------------acttttgtgttgaggtgggagtccgcaacatcacgcagccagtgtataattagctgcttggaaacaacagagtaattacaaactggttttcatgtgacagCCCCAGGATGCCTACGGACTCGAGAAACTGGCCACAGAGGAGTTGTGCAAGCATTACACAAAGGACTTCGGCATGGAGTGCCGAATTGGGCGTTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 3'ss of exon 2
gtcctctcggc-cgtgtgtctgcgtgtcgccggctgcttgctg-ca-ccgcgacgccgc-tgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
   |  ||| | ||    |||  |||  | |   ||   ||   || ||    |    | |     |  ||  |    ||  |   ||    |||  |  ||||||||||||||| ||||| || || ||| |||||||||||||| ||||||| || ||||  |||||||| ||||| ||||||||||| |  ||||| ||||
---cagtcgccacgcagttctctgtggtgaccagtgtccgcgaacatccattgctttacataatttttttggattgggcat-tgataagttacttttctggcagCCCCAAGATGCTTACGGTCTTGAAAAGTTGGCCACCGAGGAGTTGTGCAAACATTACACGAAGGACTTTGGCATGGAGTGCCGCATTGGTCGCTTTCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttg-ctgca-ccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccg-cagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
 ||| |  | ||  | |       || |  |  ||  || |   | ||     | |      |   ||   |||   || |  ||    | | ||     |||||||| ||||| || ||||| |||||| | ||||| ||||||||||| | |||||| |  |||||||||||||| ||||| ||||| |  || |||||||
-tccacatgtcctggcgctcataagt-gatgattgtctgacaatatccatcttgtcaggaataaaacttgatctgttac-tgacagtgatttccgtgtaacagCCCCAGGATGCTTATGGCCTTGAGAAGTTAGCCACGGAGGAGCTGTGTAGGCACTATACAAAGGACTTCGGCATGGAGTGTCGCATTGGTCGTTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ10353 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgccc-gcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                                           |   | |    ||| ||  | ||  | |    |      |||  | | | |   ||||||||||||||| || || |||||||||||   ||| || ||||||||||||||||||| |||||| || || || ||||||||||| |  || |||||||
-----------------------------gtatgaaaaagaaaaaaacaaaaaagct-tcttttcttttgcggggaatctgaaaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTATGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ37016 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtct---tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                                  |  ||    |    ||   | || ||  | ||||| ||   |  ||  ||||   |   |  |  ||||||||||||||| || || ||||||||||||  ||| || ||||||||||||||||||| |||||| || || || |||||||| || | |||||||||||
----------------------------------gtatgtgaaagaaagaaatc-ctttc-tttctgat-ctggaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACGGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ34003 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtct---tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                                        ||       |   | || ||  | ||||| || | |  ||  ||||   |   |  |  ||||||||||||||| || || ||||||||||||  |||||| ||||||||||||||||||| ||||||||| || || |||||||| || | |||||||||||
-------------------------------------gtatgtgaaagaagaaccctttc-tttctgat-ctgaaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGACTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ33664 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtct---tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                                  |  ||    |    ||   | || ||  | ||||| ||   |  ||  ||||   |   |  |  ||||||||||||||| || || ||||||||||||  |||||| ||||||||||||||||||| |||||| || || || |||||||| || | |||||||||||
----------------------------------gtatgtgaaagaaagaaatc-ctttc-tttctgat-ctggaagttctaaaactcttgttttccttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ37510 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactg--ctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                                  |  || || ||   ||  ||  | |  |||  |||    ||  |   | |    || ||| |  ||||||||||||||| || || ||||||||||||  |||||| ||||||||||||||||||| |||||| || || || |||||||| || | |||||||||||
----------------------------------gtatg-tgaacgaagaaccctttctttctgatctggaagttgtaaaactc--ttgttttc-cttgcagCCCCAAGATGCCTATGGGCTGGAGAAGCTGTGCACCGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGGCGCTTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ18599 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                    |  ||     |            |     | |    | ||  |  ||     |  |    | ||  |   |     ||||||||||||||| || || ||||||||||||  ||| || ||||||||||||||||||| |||||| || || || ||||||||||| |  || |||||||
--------------------gtatgaaaaagaaaaaaaaa-aaaaaaaaaggttcttttcttttgtggggaatctaaaaacaaattgcactt---tgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ36458 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgccc-gcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                              |  ||    |   |     | ||  || |  ||  ||        | ||   |||    | | |   ||||||||||||||| || || ||||||||||||  ||| || ||||||||||||||||||| |||||| || || || ||||||||||| |  || |||||||
------------------------------gtatgaaaacgaaaaaaaaaagcttct-tttcttttg--cggggaatctgaaaaaaaattgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ12864 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                           |   ||||  | |         |      |||  ||     || ||     ||    | ||          |||| |||||||| || || || ||||||||   ||  || ||||||||||||||||||| |||||| || || || |||||||| || |   | || ||||
---------------------------gtatgctgtcttccaagaaaaaaacaacttgtttctcaaactttttgtttttc----atgttgctctttctagCCTCAAGATGCTTATGGACTAGAGAAGCTCTGCAGTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGAATCGAGTGCCGGATTGGAAGATTTCACA

upper sequence: EDP09235 (Chlamydomonas reinhardtii), 3'ss of exon 5
lower sequence: EFJ19598 (Selaginella moellendorffii), 3'ss of exon 2
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgccc-gcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                    |  ||     |            |   |  |  | || |   ||  || ||| |        |||  | | | |   ||||||||||||||| || || ||||||||||||  ||| || ||||||||||||||||||| |||||| || || || ||||||||||| |  || |||||||
--------------------gtatgaaaaagaaaaaaaaaaaaaaaacttcttctcttttg-tggggaatctga--------aaaaatttgcactttgcagCCCCAAGATGCCTATGGACTGGAGAAGCTGTGCACTGAAGAGCTGTGCAAGCACTACACCAAGGATTTTGGGATCGAGTGCCGCATTGGACGATTCCACA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161808535|gb|FC097867.1|FC097867
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161816708|gb|FC102923.1|FC102923
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14239204|gb|BG858020.1|BG858020
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAAGCTG-CCACCGAGGAGCTGTGCAA
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAA-GCTGGCCACCGAGGAGCTGTGCAA
EST: gi|14228408|gb|BG847224.1|BG847224
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161811869|gb|FC099166.1|FC099166
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161823421|gb|FC105743.1|FC105743
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15367856|gb|BI527282.1|BI527282
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34982977|gb|CF556894.1|CF556894
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|6544510|gb|AV390294.1|AV390294
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         NCCCAGGATGCG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCG
EST: gi|14238173|gb|BG856989.1|BG856989
EST:     GGAGGTGGAGGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: GGAGGTGGAGGG-CGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|49459088|gb|BP087001.1|BP087001
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10777810|gb|AV634490.1|AV634490
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14227781|gb|BG846597.1|BG846597
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCACAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14237815|gb|BG856631.1|BG856631
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34982976|gb|CF556893.1|CF556893
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161819144|gb|FC110442.1|FC110442
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|23362200|gb|BU650020.1|BU650020
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34980880|gb|CF554867.1|CF554867
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCA-GATGCGTA
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTA
EST: gi|8514333|gb|BE122228.1|BE122228
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161807720|gb|FC096454.1|FC096454
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|14230350|gb|BG849166.1|BG849166
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGNAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10770906|gb|AV621729.1|AV621729
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161791540|gb|FC078916.1|FC078916
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|34980875|gb|CF554865.1|CF554865
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15702608|gb|BI726913.1|BI726913
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161821351|gb|FC109490.1|FC109490
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|10769465|gb|AV620290.1|AV620290
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|15702804|gb|BI727109.1|BI727109
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161792289|gb|FC080347.1|FC080347
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
EST: gi|161792216|gb|FC079819.1|FC079819
EST:     TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGACGCCTGGCCCGCCCAG                         CCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG
genomic: TGGAGGTGGAGGGCGGCGGCCTCAAGGAGGACGATGCCTGGCCCGCCCAGgtacagtagc ... tcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA
                       ttcttac  putative branch site (score: 2)
                                          tcttcgccc  putative PPT
                      attctta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcctctcggccgtgtgtctgcgtgtcgccggctgcttgctgcaccgcgacgccgctgtcactgctgattcttacacctcccaaacgtcttcgcccgcagCCCCAAGATGCGTACGGCCTGGAGAAGCTGGCCACCGAGGAGCTGTGCAAGCACTACAACAAGGACTTCGGCATTGAGTGCCGCATCGCGCGCTTCCACA

- - - - - -cgtgtgt
- - - - - - - - - -tgcgtgt
- - - - - - - - - - - - - - - - ctgcttg