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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcatgcactgctcctccaccatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAGACCGCCACCGTGTGCTACGGCCTGTGCCTGGGCATGGGCGGCTTCCTGC

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15371138|gb|BI530564.1|BI530564
EST:     CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
EST: gi|15701789|gb|BI726094.1|BI726094
EST:     CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCA
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCA
EST: gi|14232434|gb|BG851250.1|BG851250
EST:     CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
EST: gi|161798605|gb|FC085777.1|FC085777
EST:     CGCTGGACCAGAAGCGCATTTACTACTGGCTCAACGTGCCAGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
EST: gi|15693934|gb|BI718239.1|BI718239
EST:     GGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: GGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
EST: gi|9461085|gb|BE453557.1|BE453557
EST:     CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGAT                         GTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG
genomic: CGCTGGACCAGAAGCGCATTTATTACTGGCTCAACGTGCCCGGCGGCGATgtgagttggg ... gtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atgcatgcactgctcctccaccatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccatgcagGTGGTGCCCACCCTGGCGCTGTACGATACCATGCAGTACGTGCGCAGCAAGACCGCCACCGTGTGCTACGGCCTGTGCCTGGGCATGGGCGGCTTCCTGC

- gcatgca
- - - - - - - - - - - atatata
- - - - - - - - - - - - - - - - - - -tgtgtgt