1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacttagcccgcgggaagaggtagatttgaggttgtgtcggaacacacaggtgctgacagtttgccttgtgcctcgtgtttctcgatttctcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG
species | Chlamydomonas reinhardtii |
transcript | EDP06509 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10781101|gb|AV637781.1|AV637781
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|14232389|gb|BG851205.1|BG851205
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|14235762|gb|BG854578.1|BG854578
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|16071953|gb|BI873949.1|BI873949
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|49462222|gb|BP090135.1|BP090135
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|7686921|gb|AW757569.1|AW757569
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|49465264|gb|BP093177.1|BP093177
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|22056453|gb|BQ812340.1|BQ812340
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTNCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAAEST: gi|10772064|gb|AV622887.1|AV622887
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAA
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|14239140|gb|BG857956.1|BG857956
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|7616196|gb|AW721636.1|AW721636
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10780696|gb|AV637376.1|AV637376
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|7413174|gb|AW651928.1|AW651928
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGEST: gi|14237491|gb|BG856307.1|BG856307
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10191298|gb|BE761374.1|BE761374
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161815613|gb|FC101806.1|FC101806
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|49468797|gb|BP096658.1|BP096658
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTEST: gi|14237986|gb|BG856802.1|BG856802
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGT
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|15694359|gb|BI718664.1|BI718664
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: CGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161794205|gb|FC081639.1|FC081639
genomic: CGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161816715|gb|FC102930.1|FC102930
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10769948|gb|AV620773.1|AV620773
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTNG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|6551751|gb|AV397535.1|AV397535
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|22074644|gb|BQ823555.1|BQ823555
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161810224|gb|FC098184.1|FC098184
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|14229151|gb|BG847967.1|BG847967
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161813949|gb|FC104562.1|FC104562
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10775362|gb|AV632042.1|AV632042
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161804898|gb|FC089187.1|FC089187
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|161804532|gb|FC088847.1|FC088847
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|10780265|gb|AV636945.1|AV636945
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|7687795|gb|AW758441.1|AW758441
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|16073198|gb|BI875194.1|BI875194
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|7686812|gb|AW757460.1|AW757460
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGEST: gi|14240266|gb|BG859082.1|BG859082
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
EST: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTG GCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
genomic: GGTGCCCAACCCGGAGATGGGCTACCCCGGCGGCATCTTCGACCCCTTTGgtgagcttca ... tcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACG
cacaggtgctgacagtttgccttgtgcctcgtgtttctcgatttctcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG
tgctgac putative branch site (score: 2)
tttctcgatttctcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacttagcccgcgggaagaggtagatttgaggttgtgtcggaacacacaggtgctgacagtttgccttgtgcctcgtgtttctcgatttctcctgcgcagGCTTCTCCAAGGGTAACCTGAAGGAGCTGCAGACCAAGGAGATCAAGAACGGCCGCCTGGCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - -gttgtgt
- - - - - - - - - - - - - - - - - - - - - acacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgtgttt