1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tgcggagatattatgcgaaaggtgctgctacggggatgaacgtacttgtcgtttgaaacggtcactaacacacgcaaacgcacgcactccacccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCCAAGAAGGAGCAGTTCGCGGGCGCCTTCTACACCACCACCGTGGAGGCC
species | Chlamydomonas reinhardtii |
transcript | EDP06304 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCEST: gi|15372884|gb|BI532310.1|BI532310
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: GAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGCGTATGAGGACCTGCTGGCTGTACCGGTGACCAAGGGCAAAAAGTCEST: gi|15695018|gb|BI719339.1|BI719339
genomic: GAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCEST: gi|14229526|gb|BG848342.1|BG848342
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
EST: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCG CGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
genomic: ACGCAGGAGGAGGCGGAGCGCGAGGTGCTGGACATCCTGGAGCTGTACCGgtgagggagg ... acccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTC
ttgtcgtttgaaacggtcactaacacacgcaaacgcacgcactccacccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCCAAGAAGGAGCAGTTCGCGGGCGCCTTCTACACCACCACCGTGGAGGCC
cactaac putative branch site (score: 1)
ctccaccc putative PPT
tttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcggagatattatgcgaaaggtgctgctacggggatgaacgtacttgtcgtttgaaacggtcactaacacacgcaaacgcacgcactccacccgcacagCGGCGTGTATGAGGACCTGCTGGCTGTGCCGGTGACCAAGGGCAAGAAGTCCAAGAAGGAGCAGTTCGCGGGCGCCTTCTACACCACCACCGTGGAGGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - -acgtact
- - - - - - - - - - - - - - - - - - - - - - - - tcgtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacacg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacgca