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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtacatggctgcaacgtcttgatcatcgcagcggcgccggagggtcgctgaaacccctgcgctctggcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGTGCCCAAGGTGCTGTGCCGGCCACCTGGGCAGAGGCAGTCCGAGTGGGTG

Basic information

species Chlamydomonas reinhardtii
transcript EDP04400
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10771579|gb|AV622402.1|AV622402
EST:     CCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|15371138|gb|BI530564.1|BI530564
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|16435224|gb|BM000444.1|BM000444
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGTCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|10789074|gb|AV626794.1|AV626794
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|22049140|gb|BQ808589.1|BQ808589
EST:     TCCCCACAGGGCTTTTGGCATGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|15701789|gb|BI726094.1|BI726094
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|8287530|gb|BE025089.1|BE025089
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|14232434|gb|BG851250.1|BG851250
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|8287522|gb|BE025081.1|BE025081
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|161798605|gb|FC085777.1|FC085777
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCAAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|10773922|gb|AV624745.1|AV624745
EST:     TCCCCACAGGGCTTTTGGTAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|15692633|gb|BI716938.1|BI716938
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|10790307|gb|AV627673.1|AV627673
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGC
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGC
EST: gi|10773312|gb|AV624135.1|AV624135
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
EST: gi|10771339|gb|AV622162.1|AV622162
EST:     TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAA                         GCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT
genomic: TCCCCACAGGGCTTTTGGCAGGTCACGACGAAGCAAATAAGTGCCGCCAAgtaagtacat ... gcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatcgcagcggcgccggagggtcgctgaaacccctgcgctctggcctgcgcagGCGCTCGGGGGCACCCAAGCGCAAGGTGACCACGATGATGCCAGTGTCCGTGCCCAAGGTGCTGTGCCGGCCACCTGGGCAGAGGCAGTCCGAGTGGGTG
 tcttgat  putative branch site (score: 4)