Sequence
atgc intronic sequence ATGC exonic sequence...ggtggcggctgtctccgggcgtggcacgtcgcggctgtggcccctgcgggaattctgtgcacgcccttcaacctccattttcgacacctcttgcacacagGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAG
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP06250 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|8828252|gb|BE211982.1|BE211982EST: TTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAG GTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCC
genomic: TTAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAGgtgggtgacg ... ttgcacacagGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCC
EST:
gi|16437487|gb|BM002707.1|BM002707EST: TAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCAAG GTTCAGCATCTGGA
genomic: TAAGGCGATTAAGGACCTCGAGCTCAAGCTCGATGCGGCTCGTAAGCA-Ggtgggtgacg ... ttgcacacagGTTCAGCAGCTGGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcgggaattctgtgcacgcccttcaacctccattttcgacacctcttgcacacagGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAG
cacctctt CT-rich tract
atttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggtggcggctgtctccgggcgtggcacgtcgcggctgtggcccctgcgggaattctgtgcacgcccttcaacctccattttcgacacctcttgcacacagGTTCAGCAGCTGGAGCAGCAGCTAAACTCGAAGACGGAGGACCTGAAGGCCAAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - ttctgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacgccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acacctc