1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgggcttgacgcgaggcactggtgccggcgagcgcagaaggcgtagatctggaaccgctgctccgcgcaaacaactcctgcatagtaatgatgaactttggtggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG
species | Chlamydomonas reinhardtii |
transcript | EDP04400 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|15371138|gb|BI530564.1|BI530564
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|16435224|gb|BM000444.1|BM000444
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAATACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|10789074|gb|AV626794.1|AV626794
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|22049140|gb|BQ808589.1|BQ808589
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|15701789|gb|BI726094.1|BI726094
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|8287530|gb|BE025089.1|BE025089
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|14232434|gb|BG851250.1|BG851250
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|8287522|gb|BE025081.1|BE025081
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|161798605|gb|FC085777.1|FC085777
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTGAACCAGCGGCCCTCGAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|10773922|gb|AV624745.1|AV624745
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|15692633|gb|BI716938.1|BI716938
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|10790307|gb|AV627673.1|AV627673
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|10773312|gb|AV624135.1|AV624135
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCEST: gi|10771339|gb|AV622162.1|AV622162
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
EST: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAG GGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
genomic: AGTAGCTTATACTAGCAGCACATGCAGGCGCTCAACCAGCGGCCCTCAAGgtgggcttga ... ggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGC
ctgctccgcgcaaacaactcctgcatagtaatgatgaactttggtggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG
atagtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggcttgacgcgaggcactggtgccggcgagcgcagaaggcgtagatctggaaccgctgctccgcgcaaacaactcctgcatagtaatgatgaactttggtggtcatgcagGGCCACGACAAAGACTATGGCGTCGGGGGCCTACATCGGGGTGAAGCCCGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC