1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagcacctaccctgtcctgttagccttttgttgtctcgataactaccagtctcttgaggttttcattgtctgcttcactttatttaagtgttaattttttttcttggttttctttttatcttttcctcgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAA
species | Arabidopsis thaliana |
transcript | AT2G26000.2 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413539|gb|EG456131.1|EG456131
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: GAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413535|gb|EG456127.1|EG456127
genomic: GAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413537|gb|EG456129.1|EG456129
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413543|gb|EG456135.1|EG456135
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413540|gb|EG456132.1|EG456132
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413534|gb|EG456126.1|EG456126
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413533|gb|EG456125.1|EG456125
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413544|gb|EG456136.1|EG456136
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413528|gb|EG456120.1|EG456120
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413525|gb|EG456117.1|EG456117
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413541|gb|EG456133.1|EG456133
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCEST: gi|116413545|gb|EG456137.1|EG456137
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
EST: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAA TATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
genomic: TTAGTGAGTACAACGAACTTCTCCAGGCACAACTAGAGAATCAAAAACAAgtaagcacct ... cgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATC
tttaagtgttaattttttttcttggttttctttttatcttttcctcgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAA
tgttaat putative branch site (score: 3)
ttttttttcttggttt CT-rich tract
ttaattttttttcttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcacctaccctgtcctgttagccttttgttgtctcgataactaccagtctcttgaggttttcattgtctgcttcactttatttaagtgttaattttttttcttggttttctttttatcttttcctcgcccattagTATTTTGAAAAGTTGCTACAAAATGTCAAAGAGGAAACGGAACAGAAAATCTCAGAAGCTGCGAGCAAGGCAATAAGCCAGAGACTGCAGAAGCTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC