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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccattgcactctccaacttttctcattacggcccaaataaagctatgattccttaagcaagttttaacactgcttaaataaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCTCCAGCGCAATCGAGAAAGCTCTTGTACTTCAGAGAATAGCCTTTTGGCA

Basic information

species Arabidopsis thaliana
transcript AT1G48240.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077216|gb|DR372973.1|DR372973
EST:     CGTYCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAG                         ATCGTGAMCCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCT
genomic: CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCT
EST: gi|164232137|gb|ES150175.1|ES150175
EST:     CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAG                         ATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGC
genomic: CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGC
EST: gi|19797491|gb|AU229297.1|AU229297
EST:     CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAG                         ATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGAGCTAGCTCC
genomic: CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGA-CTAGCTCC
EST: gi|164031957|gb|ES033888.1|ES033888
EST:     TTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAG                         ATCGTGAAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCC
genomic: TTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAA-CCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCC
EST: gi|125320794|gb|EL334879.1|EL334879
EST:     TAGCTATAATCATTGTGAAG                         ATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCT
genomic: TAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCT
EST: gi|125197090|gb|EL212044.1|EL212044
EST:     CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAG                         ATCGTGAACCCAAACAACAAAGACA
genomic: CGTTCCTGTTTCTGATTGTCTGTGGTGTTATAGCTATAATCATTGTGAAGgtaaccattg ... aaaaacacagATCGTGAACCCAAACAACAAAGACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaataaagctatgattccttaagcaagttttaacactgcttaaataaaaacacagATCGTGAACCCAAACAACAAAGACATCAGAGACATCCCTGGACTAGCTCCTCCAGCGCAATCGAGAAAGCTCTTGTACTTCAGAGAATAGCCTTTTGGCA
                           ttttaac  putative branch site (score: 2)
                                       ttaaataaaaacaca  TA-rich tract