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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattcatttcttcactttttgtctcctgcaaaagtttaaagaacccatgttatcctctcttatcgcttttaaactaatacttggtttgcttgatacgcagAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G20040.2
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20040.1 (Arabidopsis thaliana), 3'ss of exon 8
lower sequence: Vv19s0014g01630.t01 (Vitis vinifera), 3'ss of exon 9
--gatt-catttcttcactttttgtctcctgcaaaagtttaaagaacccatgttatcctctcttatcgcttttaaactaatacttggtttgcttgatacgcagAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTG
  | || ||||          || |||||      | ||  | | |    || |   |||  |||    | |||  |  ||| |  | ||  ||  |  |||||||||||||||||||||||||||||||||||||   ||||| ||| || ||||||||  ||||||| | ||| |||
tcgtttacattatagtgtgaattttctccctttttaattccatggagttgtgatgctctcggttaa-attcttatccagatatt--gcttaatttttgtgcagAAACTTTGCAAAAAGGCAAATGACATGGTTCCGTAATGAGCTTATTTATCACTGGCTTGATGCTTCTAGACCCCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgttatcctctcttatcgcttttaaactaatacttggtttgcttgatacgcagAAACTTTGCAAAAAGGCAAATGACATGGTTCCGGTGTGAGCCTATGTACCACTGGCTCAATGCTTCCAAACCTCTG
                                       tttgctt  CT-rich tract
                     ttttaaactaatactt  TA-rich tract