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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aatttgcatgctctttgctgtgtcgtatgcaattttgtatatatttgcttggcattgcttctgagtttatctttccttggtgctttgtctctcaactcagGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAG

Basic information

species Arabidopsis thaliana
transcript AT5G20040.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G20040.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv19s0014g01630.t01 (Vitis vinifera), 3'ss of exon 7
aatttgcatgctctttgctgtgtcgtatgcaattttgtatatatttgcttggcattgcttctgagttt---atctttccttggtgctttgtctctcaactcagGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAG
 | |   || |   ||      |    |  | |||||| |   ||||  |   | |  |||  ||| |   || |    ||  || | |||   | |    ||||    ||||  || |||| || || ||||||||||| |||  ||||||||||||||| |||||| |||||||||| || ||||| |||||||||
-agtcctatacatattatcacatt-cgtaaatttttgtttgagtttgggtca-actagttcaaagtgtggtatgtgcattttctgatgtgttctttagtgtagGAAGTGATGGGATTCTGTCTGAGGCCAGATGGCTTCTCGATAATGGTCTTCTTCCAAATTCAAATTCTGCAACTCGAGCAATTGGTTACAGACAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttggcattgcttctgagtttatctttccttggtgctttgtctctcaactcagGACCCAATGGAGTTTTGTCAGAAGCTAGATGGCTTCTTGATCTTGGTCTTCTTCCAAACTCAAATCCTGCAACTCGTGCCATTGGGTACAGACAG
                                     ctttgtctctc  CT-rich tract
                    tttatcttt  TA-rich tract