1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ggtcttaactttttcaagttaaacaaatttgactttgtttttagaccaagtagtcaaataagttgtgataagtttatttttccgggttggaatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGACTAGAGTTAAAAGAGATAATCAATAAAGCACGCACAACTTTCACACTATG
species | Arabidopsis thaliana |
transcript | AT5G14030.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459814|gb|EG502406.1|EG502406
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459820|gb|EG502412.1|EG502412
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG TEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459815|gb|EG502407.1|EG502407
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG GEST: gi|116459826|gb|EG502418.1|EG502418
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcag-
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG CTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGACEST: gi|116459825|gb|EG502417.1|EG502417
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
EST: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAG CTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
genomic: CGTATCAAAGGCAAGCAGCAAGAAGAAGCGTTAAGTTAGTGAAATGAAAGgtgagaaagg ... aatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGAC
ccaagtagtcaaataagttgtgataagtttatttttccgggttggaatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGACTAGAGTTAAAAGAGATAATCAATAAAGCACGCACAACTTTCACACTATG
tgataagtttattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggtcttaactttttcaagttaaacaaatttgactttgtttttagaccaagtagtcaaataagttgtgataagtttatttttccgggttggaatagtgcagCTTTTGCCATGTTTATCAAGAGTTCAAGACGGGATTATACAACAATCAGACTAGAGTTAAAAGAGATAATCAATAAAGCACGCACAACTTTCACACTATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - aaacaaa
- - - - - - - - - - - - - - - - - - - - - agaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - caaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gggttgg