Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattgccttcttccactaatgtaacactattcttgtgggtgtatcatctttttattttatttttggcctaatgtttgtttggcttctgggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCAT

Basic information

species Arabidopsis thaliana
transcript AT3G51270.2
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51270.2 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0094g01560.t01 (Vitis vinifera), 3'ss of exon 5
-gttattgccttcttccact--aatgtaacactattcttgtgggtgtatcatctttttattttatttttggcctaatgtttgtttggcttctgggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCAT------------------------
  | |||||  | ||| | |  | |  ||    ||| |  | | ||| |  ||  ||  ||  | ||   |||| |||    ||   ||| ||  |||||||||||||||||||||||  || || |||||||| ||  | ||||| ||||||||||||||  | ||                        
gttcattgctgttttctattgcatttcaatttaattgtctttgctgtttgttccattagttgaaatt--agcctgatgc---ttcaactt-tgcttgagcagGCTTTGGAAGAACATGGTTTCCCTGTTCCAAATGCCGTGGACTGTAATAGACATTGTGTGGTTATGTCACTTGTCCAAGGTTATCCACT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125226335|gb|EL240420.1|EL240420
EST:     TCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAG                         GCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
genomic: TCTCTCCCGACTTGCAGCTCTCAAGGAGTTTGCTTTTATGAAGgttattgcct ... gggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
EST: gi|125204824|gb|EL219778.1|EL219778
EST:     AGTTTGCTTTTATGAAG                         GCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA
genomic: AGTTTGCTTTTATGAAGgttattgcct ... gggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatctttttattttatttttggcctaatgtttgtttggcttctgggtgagcagGCTTTGGAAGAACATGACTTTCCGGTTCCAAAAGCTATTGACTGCAATAGACATTGTGTTATCAT
                       gcctaat  putative branch site (score: 3)
      tttttattttattttt  TA-rich tract