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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA

Basic information

species Arabidopsis thaliana
transcript AT3G23590.1
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 7
gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
                                         ||||  |  |  |  |  ||      |||  |      | ||| |||  || |||   | |      |    ||  |   |||  || ||  | | | |     ||||||||||||||| || |||||||| ||||||||||||||  | ||  ||||||| |  || || ||    ||||| || ||||| || || || |||||
----------------------------------------tccaaaattgtaataattttaccaagaatttcttgtttgtaattttctgtatatgtgtgtgtagaaaactaaattaat---taaactatttattcttctt----cagCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCCGCATACCTATGGCCAGGTTATGTAAACGGACGTATCAA

upper sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: GLYMA15G10970.1 (Glycine max), 3'ss of exon 7
gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
                                    ||  |||||    ||  | || ||| | |||  |||    |  ||  ||| |   | |    ||   ||     |   ||     |||  || ||  | | ||       |||||||||||||| || |||||||| ||||||||||||||  | ||  ||||||| |  || || || |  ||||| || ||||| |||||  | |||||
-----------------------------------attttaccaagaatttcttgtttgtaattttccatatatatgtgtgtgtgtatgtgtataaaaat---ataaaattaaatcaa--ttaaactatttctttttca-------gCTGGAAACATGCGTCATCTGATAGTTGAGGCTTGTATTGCCCGCAATCTACTGGACACATCTGCATACTTATGGCCAGGTTATGTAAATGGATGTATCAA

upper sequence: AT3G23590.1 (Arabidopsis thaliana), 3'ss of exon 6
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 6
gtaagtttaataaaatttcgctctattgaattgaagttaaaccaatttgtttgtcttcgtattcttcattattgtcgcttgattgtcttcatttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgcc-gtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
                                                |||   || | | || ||  ||  | | |  | | ||| |   ||||| | | ||||     |  ||  | ||||    |  || | | | ||   | |||||||||||||||||| || ||||| |||||||||||||| |||||  |  |||| |  || || ||||  ||||| |||||||| ||||| || |||||
---------------------------------------------aaggttacgctgcatgttgttt-ttgcttttggatcagtgtttctgtttgt-ggtattattaagtttcttaat-cctagtccatcttgtatccttgtttgcagCTGGAAACATGCGCCATCTAATAGTTGAGGCTTGTATTGCCAGAAATCTGTTGGACACATCAGCATATTTCTGGCCAGGCTATGTGAATGGACGCATCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttgattttatgggcctctttcgtgcctaacatactttatgtacatgccgtagCTGGAAACATGCGCCACCTGATAGTCGAGGCTTGTATTGCAAGAAACATACTGGATATGTCGGCTTATTCGTGGCCTGGCTATGTTAATGGCCGAATCAA
                          gcctaac  putative branch site (score: 2)
                                 atactttat  TA-rich tract