1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtatgttcgatgcaatataggttctctttaagtttgctaatatctttttcttcaattttgctattctattaatgcaattttctcactcacaatctcttccacatgtattgaatgaacttgagatccttatgagcattttggtaagacaaaacttgtggattggtgataattttgcttttatatatctataccagAGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGTTCACAGCATGTAGATTCTGTGGAGAAAATCA
species | Arabidopsis thaliana |
transcript | AT5G44070.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG AGCTGCAAGGATGAEST: gi|164047797|gb|ES187423.1|ES187423
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGA
EST: TCTATACTCTG AGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATEST: gi|124730079|gb|EH821481.1|EH821481
genomic: TCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGAT
EST: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG AGCTGCAAGGAEST: gi|163982803|gb|ES096721.1|ES096721
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGA
EST: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG AGCTGCAAGGACGAAAGCTGGATC
genomic: TCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTGgtatgttcga ... tctataccagAGCTGCAAGGATGAAAGCTGGATC
ggtaagacaaaacttgtggattggtgataattttgcttttatatatctataccagAGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGTTCACAGCATGTAGATTCTGTGGAGAAAATCA
tgataattttgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttcgatgcaatataggttctctttaagtttgctaatatctttttcttcaattttgctattctattaatgcaattttctcactcacaatctcttccacatgtattgaatgaacttgagatccttatgagcattttggtaagacaaaacttgtggattggtgataattttgcttttatatatctataccagAGCTGCAAGGATGAAAGCTGGATCGAAATAGCCAAGTATTTGAAGGAAGATGTTCCTCGTCTTGTAAGTTCACAGCATGTAGATTCTGTGGAGAAAATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA