Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttcattttgccttgtcctctctgagttttcttagtttttgtattcgttggttaaccaaaagtcggtgggaaaaccattaggacagAGGCAAAAGGGAGTAATTGCAAGGTCGGTCCTTCTCAGACCAGGTGGTCGTTTAGCATGTGAATTGTCGCGTCACGGAGTTATTCTCCGTGTTAATAACT

Basic information

species Arabidopsis thaliana
transcript AT1G07010.3
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125026310|gb|EL098579.1|EL098579
EST:     GATAGGAGGAGTTCTCAAACCTATTGGGATCAATGGAATAAGTAGTAAAG                         AGGCAAAAGGGAGTAATTGCAAGG
genomic: GATAGGAGGAGTTCTCAAACCTATTGGGATCAATGGAAT--GTAGTAAAGgtacttcatt ... attaggacagAGGCAAAAGGGAGTAATTGCAAGG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtttttgtattcgttggttaaccaaaagtcggtgggaaaaccattaggacagAGGCAAAAGGGAGTAATTGCAAGGTCGGTCCTTCTCAGACCAGGTGGTCGTTTAGCATGTGAATTGTCGCGTCACGGAGTTATTCTCCGTGTTAATAACT
                  ggttaac  putative branch site (score: 3)
     ttttgtatt  TA-rich tract