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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacataatcttttcttatctttcgcttaggttcttactgtatcatggatgtaatatttctatataatatggtctgatttttttctgtgttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043106|gb|DR338861.1|DR338861
EST:     CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGG                         GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
genomic: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
EST: gi|124730079|gb|EH821481.1|EH821481
EST:     AGGGAAACGTAGAGG                         GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
genomic: AGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
EST: gi|124747959|gb|EH838089.1|EH838089
EST:     CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGG                         GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATAC
genomic: CTTTGGGAAGCCATGGACAGTATTGATCAGTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATAC
EST: gi|163982803|gb|ES096721.1|ES096721
EST:     GTCAACAGGGAAACGTAGAGG                         GTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT
genomic: GTCAACAGGGAAACGTAGAGGgtacataatc ... ttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atggatgtaatatttctatataatatggtctgatttttttctgtgttgttctcagGTTCATGCTCATATCTAGACCACACAGAGAACCCGGATTGCTCTATACTCTG
                           gtctgat  putative branch site (score: 4)
                                 tttttttctgtgtt  CT-rich tract
     tgtaatatttctatat  TA-rich tract