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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcttaaaatcttaggttcatttagttagtgttttcttgtagctcaagaatcttttttaggtgataattcttatctataactttgtgatatatccgggttttttttttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCAAAGCTTAAGCAGCAATGCATTAGATATCTTGGACCT

Basic information

species Arabidopsis thaliana
transcript AT3G52870.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164071772|gb|ES123366.1|ES123366
EST:     TACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTG                         GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAA
genomic: TACTATGAAGAATGGTGTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAA
EST: gi|164120502|gb|ES004844.1|ES004844
EST:     GCCATTCTTTTACTG                         GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
genomic: GCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: gi|164123798|gb|ES163166.1|ES163166
EST:     GCCATTCTTTTACTG                         GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
genomic: GCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: gi|125265947|gb|EL280032.1|EL280032
EST:     CTGGTCAGCCATTCTTTTACTG                         GTTGGATGTTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGT
genomic: CTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATG-TTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGT
EST: gi|125184291|gb|EL199245.1|EL199245
EST:     GTAAAGCTGATGCTGGTCAGCCATTCTTTTACTG                         GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
genomic: GTAAAGCTGATGCTGGTCAGCCATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
EST: gi|124929544|gb|EL007079.1|EL007079
EST:     ATTCTTTTACTG                         GTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC
genomic: ATTCTTTTACTGgtatgcttaa ... tttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgataattcttatctataactttgtgatatatccgggttttttttttttggcagGTTGGATGTTGGAGGAGGGATAGATTTGGATCTTAACGAATGTCCGAGGTCAAAGCTTAAGCAGCAATGCATTAGATATCTTGGACCT
              ctataac  putative branch site (score: 3)
                                      ttttttttttttggc  putative PPT
     aattcttatctataa  TA-rich tract