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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggaattatctctataggcattagtaacttttcttgatatgtcttttgaggattggaagtcttgttaagttgcagaatcttatcgctattgcgttctttgtttatatctgtctagATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCAACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGT

Basic information

species Arabidopsis thaliana
transcript AT3G51270.2
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G51270.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA11G33320.1 (Glycine max), 3'ss of exon 3
gtgaggaattatctctataggcattagtaacttttcttgatatgtcttttgaggattggaagtcttgttaagttgcagaatcttatcgctattgcgttctttgtttatatctgtctagATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCAACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGT
        | ||    | |   | | || |   |  |    |||   |      |||| |      ||| | ||| |  | | |    ||| |  ||      ||||| |   | |||||||||||||||| || ||||| || |||||||| |||||||||||||| ||  |||| |||   ||  | |||   | ||| || ||||||||||| ||
--------tcatagtaaaaaaaaattgtgatcataatcataatgatataaatatattgaa------gttcatttgaatgaccgt----ctaatatgtgagagatttatttacttttagATGATGGATTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGACTATGGTGAACAAAGGAGTGTTTGTGGCTGTTGGACGTCAGATTGGCGT

upper sequence: AT3G51270.2 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: GLYMA18G04910.1 (Glycine max), 3'ss of exon 3
gtgaggaattatctctataggcattagtaacttttcttgatatgtcttttgaggattggaagtctt--gttaagttgcagaatcttatcgctattgcgttctttgtttatatctgtctagATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCAACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGT-
 | || |  |     | |    |||| ||  |||  |  | | |    |  |  ||    |       ||| | ||| |  | | | |      || |  |||  |||  || |   |||||||||| ||||| || ||||| || |||||||| |||||||||||||| ||  |||| |||   ||  | |||   | ||| || || ||||||||||| 
-ttagtaccttctaatctgtttattattatatttagtaaaaaggaaaatctaatataaatatatagaagttcatttgaatgaccctctaatatgtgagagcttaatttg-attt---tagaTGATGGGTTCCGCCTTACCTACCTTGGTTATGATTTTCTTGCCATTAAGACTATGGTGAACAAAGGAGTGTTTGTAGCTGTTGGACGCCAGATTGGTGTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgttaagttgcagaatcttatcgctattgcgttctttgtttatatctgtctagATGATGGATTCCGACTCACCTATCTGGGTTATGACTTTCTTGCCATTAAAACATTGGTCAACCGGGGTATATTTACCGGTGTCGGTCGTCAGATTGGTGT
                                              tctgtct  CT-rich tract
                                 ttctttgtttatat  TA-rich tract