Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC
Basic information
species | Arabidopsis thaliana |
transcript | AT3G21700.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G21700.3 (Arabidopsis thaliana), 3'ss of exon 4
lower sequence: Vv12s0059g02280.t01 (Vitis vinifera), 3'ss of exon 5
--gtaatgtttttaaccatatcttttgaagtcatttgaattctagtaacaaatcaatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC
| | ||| | ||| || || || || || || ||| | | | | | ||||| |||| | |||||| | ||||| ||| | || || ||||| |||| || ||||||||||||||||| || | ||||||||||||||||| |||||||| || || | || || || |
atttgcttgacttaggtgggccccttg---ctcttctaaacatatagacgcattt-taaagtcataaggagaaagagttatt--acatgtaccttgtttt---tggcagGCAAGAGCGTACGCTAAGGCCCTAAATGCAACGCTCTTCTTCTCGAGCGCAACCTACAACATAAACGTGAACAAGATCTTCAAATTCATCACAGCAAAACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86078966|gb|DR374723.1|DR374723EST: ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAG GCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT
genomic: ATGAGTTTATTCAGCTTCCTATTGATCTGCAATGGACAATTGCTAGCCAGgtaatgtttt ... tgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aatacagtgaaattcaatataatttattttacatttggaatgttttgtgtaacagGCGAGAACATATGCGAAGGCTTTAAACGCGACGCTCTTCTTCTCGAGTGCTTCATACAACATAAACGTGAATAAGATCTTTAAGTTTGTGACGGCGAAGC
aaattcaatataattt TA-rich tract