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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagcataactttgtacacactgttttgctaaggctcagtcatattttcaagttttaaaacgtctggtggctataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGG

Basic information

species Arabidopsis thaliana
transcript AT5G44070.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT5G44070.1 (Arabidopsis thaliana), 3'ss of exon 3
lower sequence: Vv07s0005g03760.t01 (Vitis vinifera), 3'ss of exon 2
--------gtaaagcat--aactttgtacacactgttttgctaaggctcagtcatat-tttcaagttttaaaacgtctggtggctata-----attgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGG
         | |  | |  || |   || | | |||| | |  |  ||   |||| |  || || |  | | | |   |    ||| |     ||||||||| || |||||||| ||||||||||||||||| ||| ||||||  || || |||||  | ||| | |||||||| || || ||||| || ||||||||||
gtgtactactcagtcgttgaaatagctatagaatgttgttcagatccttcctcatgtgcttaaaatgctgataggagagtcaactaaacttttattgcagACGGGAACTGGTCATTTTTCACCTATTGGTGGTTATCATGCTGGAAGGGACATGGCGCTTATTTTGGATGTTGCACGCTTTAAGTACCCTCCTCACTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124931458|gb|EL008813.1|EL008813
EST:     ATATGATCTCAACATATCACCGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
genomic: ATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
EST: gi|86043106|gb|DR338861.1|DR338861
EST:     CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
genomic: CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGAT
EST: gi|86051294|gb|DR347049.1|DR347049
EST:     CTGAGAATTGCCATATGATCTCAACATATCACAGAGGTGTATTTAAGCAG                         ACTGGGACTGGTCACTTTTCAC
genomic: CTGAGAATTGTCATATGATCTCAACATATCACCGAGGTGTATTTAAGCAGgtaaagcata ... ataattgcagACTGGGACTGGTCACTTTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaaggctcagtcatattttcaagttttaaaacgtctggtggctataattgcagACTGGGACTGGTCACTTTTCACCTATTGGTGGCTATAATGCTGAGAGAGATATGGCTTTGATTCTTGATGTTGCTCGTTTCAAGTATCCCCCTCACTGGG
            tcatattttcaagttt  TA-rich tract