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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagtttgtctctgagattactatctcttaaatcttgttccttgattgattattataagttaggctgatgtttgtaacgcttgtgttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTG

Basic information

species Arabidopsis thaliana
transcript AT4G37930.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301390|gb|EL315475.1|EL315475
EST:     AGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: AGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042978|gb|DR338733.1|DR338733
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043013|gb|DR338768.1|DR338768
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042992|gb|DR338747.1|DR338747
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043016|gb|DR338771.1|DR338771
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042985|gb|DR338740.1|DR338740
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043011|gb|DR338766.1|DR338766
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042990|gb|DR338745.1|DR338745
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042975|gb|DR338730.1|DR338730
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125108442|gb|EL161353.1|EL161353
EST:     AGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTG
genomic: AGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTG
EST: gi|86042977|gb|DR338732.1|DR338732
EST:     ATCCTGAGATTGCTGACATTATTGAVCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042979|gb|DR338734.1|DR338734
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043008|gb|DR338763.1|DR338763
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043001|gb|DR338756.1|DR338756
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043018|gb|DR338773.1|DR338773
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042997|gb|DR338752.1|DR338752
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043004|gb|DR338759.1|DR338759
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043017|gb|DR338772.1|DR338772
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGATAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|124778226|gb|EH868169.1|EH868169
EST:     CTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAG
genomic: CTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAG
EST: gi|86042998|gb|DR338753.1|DR338753
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|124961770|gb|EL036266.1|EL036266
EST:     ATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042986|gb|DR338741.1|DR338741
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042999|gb|DR338754.1|DR338754
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125264828|gb|EL278913.1|EL278913
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTC
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTC
EST: gi|86043015|gb|DR338770.1|DR338770
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042996|gb|DR338751.1|DR338751
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125098800|gb|EL154819.1|EL154819
EST:     TTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTAGTGTCGGTGATGCA
genomic: TTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCT-GTGTCGGTGATGCA
EST: gi|125210966|gb|EL225920.1|EL225920
EST:     TTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: TTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|124892714|gb|EH971616.1|EH971616
EST:     ATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043012|gb|DR338767.1|DR338767
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|116433176|gb|EG475768.1|EG475768
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|116432208|gb|EG474800.1|EG474800
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042967|gb|DR338722.1|DR338722
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125103227|gb|EL157710.1|EL157710
EST:     AGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: AGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042974|gb|DR338729.1|DR338729
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTC
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTC
EST: gi|86042987|gb|DR338742.1|DR338742
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|152038565|gb|AV830516.2|AV830516
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042994|gb|DR338749.1|DR338749
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042966|gb|DR338721.1|DR338721
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042982|gb|DR338737.1|DR338737
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043006|gb|DR338761.1|DR338761
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125139537|gb|EL178263.1|EL178263
EST:     AAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: AAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|125112256|gb|EL163407.1|EL163407
EST:     TTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGC
genomic: TTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGC
EST: gi|86042968|gb|DR338723.1|DR338723
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043014|gb|DR338769.1|DR338769
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042976|gb|DR338731.1|DR338731
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042969|gb|DR338724.1|DR338724
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042970|gb|DR338725.1|DR338725
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042984|gb|DR338739.1|DR338739
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042993|gb|DR338748.1|DR338748
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042995|gb|DR338750.1|DR338750
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042988|gb|DR338743.1|DR338743
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043000|gb|DR338755.1|DR338755
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043009|gb|DR338764.1|DR338764
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043010|gb|DR338765.1|DR338765
EST:     TCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCA
genomic: TCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGG-AAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCA
EST: gi|116428932|gb|EG471524.1|EG471524
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86043005|gb|DR338760.1|DR338760
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
EST: gi|86042972|gb|DR338727.1|DR338727
EST:     ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAG                         GGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA
genomic: ATCCTGAGATTGCTGACATTATTGAGCATGAGAAAGCTAGACAATGGAAGgttagtttgt ... gttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttgattgattattataagttaggctgatgtttgtaacgcttgtgttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTG
                                ttgtaac  putative branch site (score: 2)
     attgattattataagt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagtttgtctctgagattactatctcttaaatcttgttccttgattgattattataagttaggctgatgtttgtaacgcttgtgttattatagGGACTTGAACTTATTCCATCTGAGAACTTCACATCTGTGTCGGTGATGCAAGCTGTTGGGTCTGTCATGACTAACAAATACAGTGAAGGCTATCCTGGTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT