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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcgtaaaaatatatgttacaagccaaagttctcttttcagttcaatctctagatgataatcgaaaatcttctcatattacatgcttgattaagtaaaccttgtttgaaaagacataggaaaatcacaagtattctgatctctatatgataatttgtttctaacgttagactctttttcgtttctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA

Basic information

species Arabidopsis thaliana
transcript AT3G03773.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116376041|gb|EG418633.1|EG418633
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376031|gb|EG418623.1|EG418623
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116379913|gb|EG422505.1|EG422505
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376182|gb|EG418774.1|EG418774
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376187|gb|EG418779.1|EG418779
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376018|gb|EG418610.1|EG418610
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376174|gb|EG418766.1|EG418766
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376032|gb|EG418624.1|EG418624
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|163987901|gb|ES077524.1|ES077524
EST:     TGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: TGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376177|gb|EG418769.1|EG418769
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376171|gb|EG418763.1|EG418763
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376193|gb|EG418785.1|EG418785
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376180|gb|EG418772.1|EG418772
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
EST: gi|116376038|gb|EG418630.1|EG418630
EST:     CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACT                         CTGAAACAGCCTCTGATGATGAGAGTGCA
genomic: CATCAAAGTCGACTGGAATAAATGGTGTGATGAGGATGAGGAGGTCAACTgtaagtcgta ... tctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctatatgataatttgtttctaacgttagactctttttcgtttctgtttcagCTGAAACAGCCTCTGATGATGAGAGTGCA
                    ttctaac  putative branch site (score: 1)
                                 ctctttttcgtttctg  putative PPT
     tatatgataatttgtt  TA-rich tract