1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaaaagtatatgtaaatatctcaaaatatatattattgtaagaaaaagatctccacttggttattggttttgtaatcttgtggtttggttatgggtttagGTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTTCAGCATTGGATTGAAGCT
species | Arabidopsis thaliana |
transcript | AT3G52870.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GAATGCTTCTAAG GTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTTTCAEST: gi|125060041|gb|EL128718.1|EL128718
genomic: GAATGCTTCTAAGgtatgccttt ... atgggtttagGTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTT-CA
EST: CTGAAACTGCTGTTTCTAGATGGAACCGTGTTAGCTTGAATGCTTCTAAG GTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTTEST: gi|124979629|gb|EL052651.1|EL052651
genomic: CTGAAACTGCTGTTTCTAGATGGAACCGTGTTAGCTTGAATGCTTCTAAGgtatgccttt ... atgggtttagGTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTT
EST: TGAAACTGCTGTTTCTAGATGGAACCGTGTTAGCTTGAATGACTTCTAAG GTGGGGAAGGGTCTGTCTATAGTCG
genomic: TGAAACTGCTGTTTCTAGATGGAACCGTGTTAGCTTGAATG-CTTCTAAGgtatgccttt ... atgggtttagGTGGGGAAGGGTCTGTCTATAGTCG
aagatctccacttggttattggttttgtaatcttgtggtttggttatgggtttagGTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTTCAGCATTGGATTGAAGCT
ttttgtaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaaagtatatgtaaatatctcaaaatatatattattgtaagaaaaagatctccacttggttattggttttgtaatcttgtggtttggttatgggtttagGTGGGGAAGGGTCTGTCTATAGTCGACAAAGCTCAGAAATTGGCCTTTCAGCATTGGATTGAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
aaaaagta
- - - - - - - - - -ctcaaaa
- - - - - - - - - - - - - - - - - - - -aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggttttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtttgg