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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctttaagtaatggtaaacataaatgatagagtatatataagcctttgtttcatatgtgttctctttgatttctctattgcagAATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACCATGCAATTGCCTAAACTTCAGCAAATGCCTGAGGCTACAGGAACATCAG

Basic information

species Arabidopsis thaliana
transcript AT2G24030.1
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116394012|gb|EG436604.1|EG436604
EST:     CTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATTG                         AATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACC
genomic: CTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATTGgtgagttctt ... tctattgcagAATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACC
EST: gi|116394010|gb|EG436602.1|EG436602
EST:     CTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATTG                         AATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACC
genomic: CTACCGGAACATCAATGTTGGAGTCTAATAAAGAGAATTTGATTGTATTGgtgagttctt ... tctattgcagAATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agagtatatataagcctttgtttcatatgtgttctctttgatttctctattgcagAATAGAGCTGATATTATAGGAGCTAAGCCTAAAGCAGACAGTGTTGGTACCATGCAATTGCCTAAACTTCAGCAAATGCCTGAGGCTACAGGAACATCAG
                                   ctttgat  putative branch site (score: 5)
                               ttctctttgatttctc  CT-rich tract
     atatataa  TA-rich tract