1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaatataatgatctggtgggattgatcatcatgagttttggtttttaatttgttttgttgtttgatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGTCTTAGCTCACAACATTGAGACAGTTGAAGAGCTTCAGAG
species | Arabidopsis thaliana |
transcript | AT2G20860.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGEST: gi|125272498|gb|EL286583.1|EL286583
genomic: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
EST: AAGCCGGATATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGEST: gi|125270759|gb|EL284844.1|EL284844
genomic: AAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
EST: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCEST: gi|164166324|gb|EL988490.1|EL988490
genomic: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCC
EST: TTCTTGAAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGEST: gi|125079141|gb|EL141258.1|EL141258
genomic: TTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
EST: ATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGEST: gi|125222718|gb|EL236803.1|EL236803
genomic: ATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
EST: AAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGEST: gi|116472161|gb|EG514753.1|EG514753
genomic: AAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
EST: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAAGGTTTCCAAGTCAEST: gi|164107885|gb|ES007227.1|ES007227
genomic: TGTTCAGAGATTGAAATTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAA-GGTTTCCAAGTCA
EST: TTCTTGAAGCCGGAGATGTTGATTGAAGCACTAG TTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
genomic: TTCTTGAAGCCGGAGATGTTGATTGAAGCACTAGgtaatataat ... gatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAG
ggattgatcatcatgagttttggtttttaatttgttttgttgtttgatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGTCTTAGCTCACAACATTGAGACAGTTGAAGAGCTTCAGAG
tttttaatttgttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatataatgatctggtgggattgatcatcatgagttttggtttttaatttgttttgttgtttgatgatgtagTTCCTGATTTCCGCGGAGATGGTGGATGTGTTGAGAAGGTTTCCAAGTCAGGGCTTGATGTCTTAGCTCACAACATTGAGACAGTTGAAGAGCTTCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT