1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagtaacttataattcaataaatcatagaaaaaggttttgccacatttggcgggagcaagcgctaatgataaataattgttggttcgaaaaatttcagCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAGTGGAAAGATGAGAGCTCAATA
species | Arabidopsis thaliana |
transcript | AT1G14880.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT CGTGTTGTGCGGCTGGAGCATTATAEST: gi|125263072|gb|EL277157.1|EL277157
genomic: TGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAGCATTATA
EST: TATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT CGTGTTGTGCGGCTGGAGACATTATACATGTTGATAGACTTAATAACEST: gi|19878915|gb|AU239746.1|AU239746
genomic: TATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAG-CATTATACATGTTGATAGACTTAATAAC
EST: ATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAAT CGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTT
genomic: ATGTATCACATTTGGCCAAGTCGCTGAGATTGTAGATCGAGGATCCAAATgtaagtaact ... aaaatttcagCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTT
catttggcgggagcaagcgctaatgataaataattgttggttcgaaaaatttcagCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAGTGGAAAGATGAGAGCTCAATA
cgctaat putative branch site (score: 3)
taatgataaataattg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacttataattcaataaatcatagaaaaaggttttgccacatttggcgggagcaagcgctaatgataaataattgttggttcgaaaaatttcagCGTGTTGTGCGGCTGGAGCATTATACATGTTGATAGACTTAATAACAAGTTGTGGGCGTATGTACGCGTGTTTCTATAGTGGAAAGATGAGAGCTCAATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA