1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtactaatcccgtgaaggaaagaaaaacacatatggcgtagtatctactttgattatatctctacattgttgtttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTAAAGCCCAAG
species | Arabidopsis thaliana |
transcript | AT4G37930.1 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|124843077|gb|EH927514.1|EH927514
genomic: CAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAGCAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGEST: gi|125209026|gb|EL223980.1|EL223980
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGG
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTEST: gi|86059292|gb|DR355049.1|DR355049
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTT
EST: CAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|124903205|gb|EH977285.1|EH977285
genomic: CAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGEST: gi|125311644|gb|EL325729.1|EL325729
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGG
EST: CAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGEST: gi|125164170|gb|EL190867.1|EL190867
genomic: CAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTG
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG GCTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAAEST: gi|125279158|gb|EL293243.1|EL293243
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAA
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTEST: gi|152034927|gb|BP840236.2|BP840236
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|125314060|gb|EL328145.1|EL328145
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: CAGTGCAAAGTTTGCTCAG ACTCT-ATGGAGAGAGGATATGAACTTGTTTCTGEST: gi|124760392|gb|EH850522.1|EH850522
genomic: CAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTG
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGEST: gi|116443767|gb|EG486359.1|EG486359
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAG
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|125162386|gb|EL189156.1|EL189156
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: CAGTGCAAAGTTTGCTCAG ACTNTAATGGAGAGAGGATATGAACTTGTTTCTGEST: gi|116484717|gb|EG527309.1|EG527309
genomic: CAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTG
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|125283169|gb|EL297254.1|EL297254
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: TAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|125205208|gb|EL220162.1|EL220162
genomic: TAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: TAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|125278894|gb|EL292979.1|EL292979
genomic: TAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: AACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|86079465|gb|DR375222.1|DR375222
genomic: AACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|124851541|gb|EH935978.1|EH935978
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: CAGTGCAAAGTTTGCTCAAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGEST: gi|125249132|gb|EL263217.1|EL263217
genomic: CAGTGCAAAGTTTGCTC-AGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTG
EST: AACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|116484716|gb|EG527308.1|EG527308
genomic: AACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|116484726|gb|EG527318.1|EG527318
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATEST: gi|116484725|gb|EG527317.1|EG527317
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
EST: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAG ACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
genomic: ACAAAGCATACCAAGAACAAGTCCTGAGTAACAGTGCAAAGTTTGCTCAGgtactaatcc ... tttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCAT
cacatatggcgtagtatctactttgattatatctctacattgttgtttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTAAAGCCCAAG
ctttgat putative branch site (score: 5)
ttgtttc putative PPT
tactttgattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactaatcccgtgaaggaaagaaaaacacatatggcgtagtatctactttgattatatctctacattgttgtttcgtgcagACTCTAATGGAGAGAGGATATGAACTTGTTTCTGGTGGAACTGACAACCATCTGGTTCTAGTGAATCTAAAGCCCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA