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gtgatttaccaatttgattttctttttaatatatacatcatttgttcacaatacctagtagaaaataatctctcagtcgctgaatccatgtcatgaatgaccctgaaattctcatttttctttgaactctggtcctttcttacagGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAAT
species | Arabidopsis thaliana |
transcript | AT3G51270.2 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: CTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAG GTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGTEST: gi|164016050|gb|EL985748.1|EL985748
genomic: CTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGgtgatttacc ... tttcttacagGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGT
EST: GTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTT-CAGAAAA-G GTTTAATATGTCTTTCCATGAAGAEST: gi|124989614|gb|EL061913.1|EL061913
genomic: GTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGgtgatttacc ... tttcttacagGTTTAATATGTCTTTCCATGAAGA
EST: ATGTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGTAAAAG GTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGT
genomic: ATGTACTTTGACCGTGATATCGAATGCATCTTCAAGTTTTTCAGAAAAAGgtgatttacc ... tttcttacagGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGT
tcatgaatgaccctgaaattctcatttttctttgaactctggtcctttcttacagGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAAT
ctctggtcctttctt CT-rich tract
aaattctcattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttaccaatttgattttctttttaatatatacatcatttgttcacaatacctagtagaaaataatctctcagtcgctgaatccatgtcatgaatgaccctgaaattctcatttttctttgaactctggtcctttcttacagGTTTAATATGTCTTTCCATGAAGATAAAGGTGAATCAGAGGAGACGGAGGTGGATGAGAACAGCAGACCATCTTTTTTCGATATTACTAAAGATGCTAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG