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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtctctatctagctttcgttttaaaagtttttcttgatggcatatttacatctacttacatttctgtagagtattattgacttgttgttttctcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG

Basic information

species Arabidopsis thaliana
transcript AT2G26000.2
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116413542|gb|EG456134.1|EG456134
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413539|gb|EG456131.1|EG456131
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413535|gb|EG456127.1|EG456127
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413537|gb|EG456129.1|EG456129
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413543|gb|EG456135.1|EG456135
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413540|gb|EG456132.1|EG456132
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413534|gb|EG456126.1|EG456126
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAGGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413533|gb|EG456125.1|EG456125
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413544|gb|EG456136.1|EG456136
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413528|gb|EG456120.1|EG456120
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413525|gb|EG456117.1|EG456117
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413541|gb|EG456133.1|EG456133
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
EST: gi|116413545|gb|EG456137.1|EG456137
EST:     TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGAT                         TTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA
genomic: TGCAAACCAGGTTTGACAGATGTGTCAAAGAGAAGCAATTTCTTGAAGATgtgagtctct ... tcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatctacttacatttctgtagagtattattgacttgttgttttctcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG
                                 cttgttgttttctc  CT-rich tract
                      agtattatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgagtctctatctagctttcgttttaaaagtttttcttgatggcatatttacatctacttacatttctgtagagtattattgacttgttgttttctcatgtgtagTTGAACGAAAATCTTGTGAAAAATAAGGACGTATGGAGCACCAAGATTACAGAAATGAAAGAAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA