1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctatataaaataagctggattatataatcctgcaaggaaacaaacaggcctaaaaagagacatttacaagctaaatttgctgcacattgtgctgtttcagAAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTCCTGCTGCTCCAGCTCGTGCTGTGAGTGACTCTGATCCAAA
species | Zea mays |
transcript | GRMZM5G898735_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTGCTGCTGCTTGGAATCCACAACAGCCTGCCACGTCGCAACAGCAAG AAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAAEST: gi|78083214|gb|DV511607.1|DV511607
genomic: AGCTGCTGCTGCTTGGAATCCACAACAGCCTGCCACGTCGCAACAGCAAGgtcaggcatt ... gctgtttcagAAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAA
EST: AGCTGCTGCTGCTTGGAATCCACAACAGCCTGCCACGTCGCAACAGCAAG AAGAAGCGCC-ACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAA
genomic: AGCTGCTGCTGCTTGGAATCCACAACAGCCTGCCACGTCGCAACAGCAAGgtcaggcatt ... gctgtttcagAAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAA
aggcctaaaaagagacatttacaagctaaatttgctgcacattgtgctgtttcagAAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTCCTGCTGCTCCAGCTCGTGCTGTGAGTGACTCTGATCCAAA
agctaaa putative branch site (score: 37)
ctgtttc putative PPT
taaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctatataaaataagctggattatataatcctgcaaggaaacaaacaggcctaaaaagagacatttacaagctaaatttgctgcacattgtgctgtttcagAAGAAGCGCCCACTACTCCAAGAAGTGAGGACGCTCCTACATCAGGAGGAAGCGATGGTCCTGCTGCTCCAGCTCGTGCTGTGAGTGACTCTGATCCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - aaaataa
- - - - - - -gctggat
- - - - - - - - - - - - - -tcctgca
- - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - caggcct
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgctgc