Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|44901004|gb|CK827549.1|CK827549EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|211211608|gb|FL139134.1|FL139134EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTCGGTAGGT
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGT
EST:
gi|21390351|gb|BQ528400.1|BQ528400EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|32942727|gb|CF047546.1|CF047546EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|37398164|gb|CF636391.1|CF636391EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|211209047|gb|FL139124.1|FL139124EST: TCTGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAA
genomic: TC-GAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAA
EST:
gi|211447209|gb|FL476655.1|FL476655EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|22935478|gb|BU571753.1|BU571753EST: GTCGAGGAGGATGACAACCCTGTCGGCGGTGGCTTCCCGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|5525365|gb|AI861258.1|AI861258EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|22542294|gb|BU092732.1|BU092732EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|21481131|gb|BQ577814.1|BQ577814EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|44900341|gb|CK826886.1|CK826886EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|211211613|gb|FL139139.1|FL139139EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAAYTTGGTAGGTATCCTTTGATTGGACTTCATCAG
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAG
EST:
gi|5915554|gb|AW053195.1|AW053195EST: GTCGAGGAGGATGACACCACTGTCGGCGGTGGCTAACAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|5455995|gb|AI833685.1|AI833685EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|78022779|gb|DV491166.1|DV491166EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|28984784|gb|BQ539199.2|BQ539199EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|87154268|gb|DY399057.1|DY399057EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|12971520|gb|BG267523.1|BG267523EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTAAAACAAA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|22542416|gb|BU092854.1|BU092854EST: GTCGAGGAGGATGACAACCCTGTCGGCGGTGGCTACCCGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|113703370|gb|EE680874.1|EE680874EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|22935479|gb|BU571754.1|BU571754EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|211206465|gb|FL139106.1|FL139106EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|6760490|gb|AW324649.1|AW324649EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|22935554|gb|BU571829.1|BU571829EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
EST:
gi|21390572|gb|BQ528621.1|BQ528621EST: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAG GAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
genomic: GTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGA
RNA-Seq data
ATGC Supported by RNA-Seq exonic block that spans over the splice site
atgs Truncated intron sequence
Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.
Found data for 4 RNA-Seq libraries.
Block sizes:
48 (upstream exon),
48 (downstream exon)
Score:
68AGCAGTTCGACCCCACCAATGACTTCCCCGTACCATACGTCAACACCACCGTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGAAGCGGCACTATTTTCATTCCAGCTATTAAATATCCCCTTTTCTTTTGTT
Block sizes:
48 (upstream exon),
48 (downstream exon)
Score:
43AGCAGTTCGACCCCACCAATGACTTCCCCGTACCATACGTCAACACCACCGTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGAAGCGGCACTATTTTCATTCCAGCTATTAAATATCCCCTTTTCTTTTGTT
Block sizes:
49 (upstream exon),
49 (downstream exon)
Score:
56AGCAGTTCGACCCCACCAATGACTTCCCCGTACCATACGTCAACACCACCGTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGAAGCGGCACTATTTTCATTCCAGCTATTAAATATCCCCTTTTCTTTTGTT
Block sizes:
49 (upstream exon),
48 (downstream exon)
Score:
47AGCAGTTCGACCCCACCAATGACTTCCCCGTACCATACGTCAACACCACCGTCGAGGAGGATGACAACACTGTCGGCGGTGGCTACCAGAAGTGACTCAGgtgagaggtg ... tacattgcagGAAAGCTTGCTGGTTAATTTGGTAGGTATCCTTTGATTGGACTTCATCAGAAGCGGCACTATTTTCATTCCAGCTATTAAATATCCCCTTTTCTTTTGTT