Sequence
atgc intronic sequence ATGC exonic sequence...tcagttcgtcatgtttttgggaattggttaatagtcattgaccctataactaaacaacttactttcaattttgtgcggggcaatactaatgtttttacagGTGATCTTCGGGGGGAACATAATGGCTTAGGTTTTGGACCAAGCTACAGAAAAGGCTTAGGTTTTGAACCAAGCTACAGAAAAGTGAAGAGGAAGATGAC
Basic information
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|60343829|gb|DN210802.1|DN210802EST: AGCATCATGAACTAATGGGGAACGTCATTTGCAGATTTTACTTGACCAAG GTGATCTTCGGGGGGAACATAATGGCTTAGGTTTTGGACCAAGCTACAGAA
genomic: AGCATCATGAACTAATGGGGAACGTCATTTGCAGATTTTACTTGACCAAGgtatgcatca ... gtttttacagGTGATCTTCGGGGGGAACATAATGGCTTAGGTTTTGGACCAAGCTACAGAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ataactaaacaacttactttcaattttgtgcggggcaatactaatgtttttacagGTGATCTTCGGGGGGAACATAATGGCTTAGGTTTTGGACCAAGCTACAGAAAAGGCTTAGGTTTTGAACCAAGCTACAGAAAAGTGAAGAGGAAGATGAC
tactaat putative branch site (score: 1)
tgttttt CT-rich tract
aatactaatgttttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tcagttcgtcatgtttttgggaattggttaatagtcattgaccctataactaaacaacttactttcaattttgtgcggggcaatactaatgtttttacagGTGATCTTCGGGGGGAACATAATGGCTTAGGTTTTGGACCAAGCTACAGAAAAGGCTTAGGTTTTGAACCAAGCTACAGAAAAGTGAAGAGGAAGATGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG