1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gttacaaccttcaatttagcaattagggatttataaacttctgtgatcctctaattttctacagcctccatttctaacttttccttttcgtttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTACTGTGCCTGCCTAAGAGCATAGGAGATTTGCGCAAT
species | Zea mays |
transcript | GRMZM5G890241_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAAT TGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTACEST: gi|16377233|gb|BI991834.1|BI991834
genomic: AAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAATgttagttcct ... tttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTAC
EST: TAAAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAAT TGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTACEST: gi|31909395|gb|CD650897.1|CD650897
genomic: TAAAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAATgttagttcct ... tttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTAC
EST: TAAAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAAT TGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTAC
genomic: TAAAATCCTCACACTTGACCGAAATAGGATATCTATCTTGCCTGAAGAATgttagttcct ... tttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTAC
atcctctaattttctacagcctccatttctaacttttccttttcgtttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTACTGTGCCTGCCTAAGAGCATAGGAGATTTGCGCAAT
ttctaac putative branch site (score: 27)
cctccatttctaactt CT-rich tract
taattttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttacaaccttcaatttagcaattagggatttataaacttctgtgatcctctaattttctacagcctccatttctaacttttccttttcgtttcatccagTGGGTTCACTGTCAAACCTTCAGCAACTTTCTGTTCCTCAAAATTTTTTACTGTGCCTGCCTAAGAGCATAGGAGATTTGCGCAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - accttca
- - - - - - - - - - - - - - - - - - acttctg
- - - - - - - - - - - - - - - - - - - - - -tgatcct