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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtcgcctactcgttccctaggcgctgaggcataccctagttacgccatatcacttaggcgtacctccagcgccacacgatgctgcaacacctcaaaaaccatgaatgagAGAGAGTGACAGTTTGCAAACTTGAAACTTT

Basic information

species Zea mays
transcript GRMZM5G888698_T01
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32939247|gb|CF044066.1|CF044066
EST:     GTTTATCCTTTATCGGTCAGGAGCAAAATAATGAGACCATGGTTTTTGAG                         AGAGAGTGACAGTTTGCAAACTTGAAACTTT
genomic: GTTTATCCTTTATCGGTCAGGAGCAAAATAATGAGACCATGGTTTTTGAGgtgtcgccta ... catgaatgagAGAGAGTGACAGTTTGCAAACTTGAAACTTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taggcgtacctccagcgccacacgatgctgcaacacctcaaaaaccatgaatgagAGAGAGTGACAGTTTGCAAACTTGAAACTTT
                                     tcaaaaa  TA-rich tract